Entropically driven helix formation.

نویسندگان

  • Yehuda Snir
  • Randall D Kamien
چکیده

The helix is a ubiquitous motif for biopolymers. We propose a heuristic, entropically based model that predicts helix formation in a system of hard spheres and semiflexible tubes. We find that the entropy of the spheres is maximized when short stretches of the tube form a helix with a geometry close to that found in natural helices. Our model could be directly tested with wormlike micelles as the tubes, and the effect could be used to self-assemble supramolecular helices.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Ribosome exit tunnel can entropically stabilize -helices

Several experiments have suggested that newly synthesized polypeptide chains can adopt helical structures deep within the ribosome exit tunnel. We hypothesize that confinement in the roughly cylindrical tunnel can entropically stabilize -helices. The hypothesis is validated by using theory and simulations of coarse-grained off-lattice models. The model helix, which is unstable in the bulk, is s...

متن کامل

Anti-Icing Superhydrophobic Surfaces: Controlling Entropic Molecular Interactions to Design Novel Icephobic Concrete

Tribology involves the study of friction, wear, lubrication, and adhesion, including biomimetic superhydrophobic and icephobic surfaces. The three aspects of icephobicity are the low ice adhesion, repulsion of incoming water droplets prior to freezing, and delayed frost formation. Although superhydrophobic surfaces are not always icephobic, the theoretical mechanisms behind icephobicity are sim...

متن کامل

Evidence of entropically driven C60 fullerene aggregation in aqueous solution.

In the present work, we report the first experimental evidence of entropically driven C60 fullerene aggregation in aqueous solution, occurring with nearly zero enthalpy change.

متن کامل

Energetics of target peptide binding by calmodulin reveals different modes of binding.

Thermodynamic parameters of interactions of calcium-saturated calmodulin (Ca(2+)-CaM) with melittin, C-terminal fragment of melittin, or peptides derived from the CaM binding regions of constitutive (cerebellar) nitric-oxide synthase, cyclic nucleotide phosphodiesterase, calmodulin-dependent protein kinase I, and caldesmon (CaD-A, CaD-A*) have been measured using isothermal titration calorimetr...

متن کامل

Polyproline II helix is the preferred conformation for unfolded polyalanine in water.

Does aqueous solvent discriminate among peptide conformers? To address this question, we computed the solvation free energy of a blocked, 12-residue polyalanyl-peptide in explicit water and analyzed its solvent structure. The peptide was modeled in each of 4 conformers: alpha-helix, antiparallel beta-strand, parallel beta-strand, and polyproline II helix (P(II)). Monte Carlo simulations in the ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • Science

دوره 307 5712  شماره 

صفحات  -

تاریخ انتشار 2005